From 41ac5852bec99780ab3ec823e42487b85c0b9a4d Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Wed, 18 Oct 2023 21:08:40 -0500
Subject: [PATCH] feat: Add parameters for input and output directories

---
 nextflow.config | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/nextflow.config b/nextflow.config
index d1ac49c..cf6f3c6 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -1,5 +1,7 @@
 params {
+    input = null
     reference = null
+    outdir = null
 
     // Config options
     config_profile_name = null