From 588d307ff65c80fcf8f40a0745ab33c9bcf28a94 Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Fri, 29 Sep 2023 14:17:39 -0500
Subject: [PATCH] fix: Remove invalid shorah parameter

It turns out that -t threads only works for shorah shotgun, not shorah
amplicon. Remove the invalid parameter.
---
 modules/shorah/amplicon/main.nf | 1 -
 1 file changed, 1 deletion(-)

diff --git a/modules/shorah/amplicon/main.nf b/modules/shorah/amplicon/main.nf
index c8ccf38..f37d70c 100644
--- a/modules/shorah/amplicon/main.nf
+++ b/modules/shorah/amplicon/main.nf
@@ -21,7 +21,6 @@ process SHORAH_AMPLICON {
     script:
     """
     shorah amplicon \\
-        -t ${task.cpus} \\
         -f ${reference} \\
         -b ${bam} \\
     """