From b22ea2664bb379a2bff319dc1b366a5be07318ca Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Thu, 19 Oct 2023 16:01:51 -0500
Subject: [PATCH] fix: Add escapes to ML haplotype caller

---
 nextflow.config | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nextflow.config b/nextflow.config
index cf6f3c6..fd47b82 100644
--- a/nextflow.config
+++ b/nextflow.config
@@ -57,7 +57,7 @@ process {
     }
 
     withName: 'HAPLINK_ML_HAPLOTYPES' {
-        ext.ml_args = """
+        ext.ml_args = """\
         --simulated-reads \\
         --overlap-min 20 \\
         --overlap-max 8000 \\