From d0b25c41b92097237c4c0aa1a8f996c7ae250f92 Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Wed, 9 Aug 2023 17:53:07 -0500
Subject: [PATCH] fix: Add BAM index to ViQuas input

---
 modules/viquas/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/modules/viquas/main.nf b/modules/viquas/main.nf
index de9701a..f02b34b 100644
--- a/modules/viquas/main.nf
+++ b/modules/viquas/main.nf
@@ -3,7 +3,7 @@ process VIQUAS {
     label 'process_high'
 
     input:
-    tuple val(prefix), path(bam)
+    tuple val(prefix), path(bam), path(bai)
     path(reference)
 
     output: