From d8fee48c28e8e6b63b9fc7361e8100a4637b56f8 Mon Sep 17 00:00:00 2001
From: "Thomas A. Christensen II" <25492070+MillironX@users.noreply.github.com>
Date: Mon, 25 Sep 2023 18:44:50 -0500
Subject: [PATCH] feat: Add CliqueSNV to pipeline

---
 main.nf | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/main.nf b/main.nf
index 65b1fd1..c73f49c 100755
--- a/main.nf
+++ b/main.nf
@@ -34,6 +34,11 @@ workflow {
         .out
         .set { ch_alignments }
 
+    CLIQUESNV(
+        ch_alignments,
+        'snv-pacbio'
+    )
+
     HAPLINK_VARIANTS( ch_alignments, ch_reference )
     HAPLINK_VARIANTS
         .out
@@ -75,9 +80,4 @@ workflow {
         ch_alignments,
         ch_reference
     )
-
-    CLIQUESNV(
-        ch_alignments,
-        'snv-pacbio'
-    )
 }