diff --git a/modules/viquas/viquas b/modules/viquas/viquas index 9b0f1d0..ee196b7 100644 --- a/modules/viquas/viquas +++ b/modules/viquas/viquas @@ -29,7 +29,8 @@ fi REFERENCE_FILE=$(basename "${1}") BAM_FILE=$(basename "${2}") -cp -r /viquas/{viquas_files,ViQuaS.R} . +cp -r /viquas/viquas_files . +cp /viquas/ViQuaS.R . case $NUM_ARGS in 2) @@ -44,4 +45,5 @@ case $NUM_ARGS in exit 1 esac -rm -rf ./{viquas_files,ViQuaS.R} +rm -rf ./viquas_files +rm ViQuaS.R