{
  "$schema": "http://json-schema.org/draft-07/schema",
  "$id": "https://raw.githubusercontent.com/nf-core/taxprofiler/master/assets/schema_input.json",
  "title": "haplotyper battle royale pipeline - params.input schema",
  "description": "Schema for the file provided with params.input",
  "type": "array",
  "items": {
    "type": "object",
    "properties": {
      "sample": {
        "type": "string",
        "pattern": "^\\S+$",
        "errorMessage": "Sample name must be provided and cannot contain spaces"
      },
      "fastq_1": {
        "type": "string",
        "pattern": "^\\S+\\.f(ast)?q\\.gz$",
        "errorMessage": "FastQ file for reads 1 must be provided, cannot contain spaces and must have extension '.fq.gz' or '.fastq.gz'"
      }
    },
    "required": ["sample", "fastq_1"]
  }
}