process VIQUAS {
    tag "${prefix}"
    label 'process_high'

    input:
    tuple val(prefix), path(bam)
    path(reference)

    output:
    tuple val(prefix), path("*.fa")

    publishDir "results/viquas", mode: 'copy'

    script:
    """
    viquas \\
        ${reference} \\
        ${bam}
    """
}