process VIQUAS { tag "${prefix}" label 'process_high' container 'code.millironx.com/millironx/haplotyper-battle-royale:viquas' input: tuple val(prefix), path(bam), path(bai) path(reference) output: tuple val(prefix), path("*.fa") publishDir "results/viquas", mode: 'copy' script: """ viquas \\ ${reference} \\ ${bam} """ }