{
  "$schema": "http://json-schema.org/draft-07/schema",
  "$id": "https://raw.githubusercontent.com/nf-core/taxprofiler/master/assets/schema_input.json",
  "title": "haplotyper battle royale pipeline - params.input schema",
  "description": "Schema for the file provided with params.input",
  "type": "array",
  "items": {
    "type": "object",
    "properties": {
      "sample": {
        "type": "string",
        "pattern": "^\\S+$",
        "errorMessage": "Sample name must be provided and cannot contain spaces"
      },
      "sra": {
        "type": "string",
        "pattern": "^(((SR|ER|DR)[APRSX])|(SAM(N|EA|D))|(PRJ(NA|EB|DB))|(GS[EM])|(syn))(\\d+)$",
        "errorMessage": "Please provide a valid SRA, ENA, DDBJ or GEO identifier"
      }
    },
    "required": ["sample", "sra"]
  }
}