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nf-configs/conf/imperial_mb.config

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//Profile config names for nf-core/configs
params {
// Config Params
config_profile_description = 'Imperial College London - MEDBIO QUEUE - HPC Profile -- provided by nf-core/configs.'
config_profile_contact = 'Combiz Khozoie (c.khozoie@imperial.ac.uk)'
config_profile_url = 'https://www.imperial.ac.uk/bioinformatics-data-science-group/resources/uk-med-bio/'
// Resources
max_memory = 640.GB
max_cpus = 32
max_time = 168.h
}
executor {
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$pbspro {
queueSize = 50
}
$local {
cpus = 2
queueSize = 1
memory = '32 GB'
}
}
singularity {
enabled = true
autoMounts = true
runOptions = "-B /rds/,/rdsgpfs/,/rds/general/user/$USER/ephemeral/tmp/:/tmp,/rds/general/user/$USER/ephemeral/tmp/:/var/tmp"
}
process {
executor = 'pbspro'
queue = 'pqmedbio-tput'
//queue = 'med-bio' //!! this is an alias and shouldn't be used
withLabel:process_large {
queue = 'pqmedbio-large'
}
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}