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20 lines
765 B
Markdown
20 lines
765 B
Markdown
2 years ago
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# nf-core/configs: eva taxprofiler specific configuration
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Extra specific configuration for taxprofiler pipeline
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## Usage
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To use, run the pipeline with `-profile eva`.
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This will download and launch the taxprofiler specific [`eva.config`](../../../conf/pipeline/taxprofiler/eva.config) which has been pre-configured with a setup suitable for the MPI-EVA cluster.
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Example: `nextflow run nf-core/taxprofiler -profile eva`
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## taxprofiler specific configurations for eva
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Specific configurations for eva has been made for taxprofiler.
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### General profiles
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- The general MPI-EVA profile runs with default nf-core/taxprofiler parameters, but with modifications to account for issues SGE have with Java and python tools, nameling: BBDUK, MALT, MetaPhlAn3, and MEGAN
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