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28 lines
590 B
Text
28 lines
590 B
Text
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/*
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* -------------------------------------------------
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* University of Cape Town HEX cluster config file
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* -------------------------------------------------
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* http://hpc.uct.ac.za/index.php/hex-3/
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*/
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singularity {
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enabled = true
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cacheDir = "/scratch/DB/bio/singularity-containers"
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}
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process {
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stageInMode = 'symlink'
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stageOutMode = 'rsync'
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queue = 'UCTlong'
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clusterOptions = { "-M $params.email -m abe -l nodes=1:ppn=1:series600" }
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}
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executor{
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executor = 'pbs'
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jobName = { "$task.tag" }
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}
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params {
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igenomes_base = '/scratch/DB/bio/rna-seq/references'
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}
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