2022-03-07 20:01:46 +00:00
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params {
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config_profile_description = 'Van Andel Institute HPC profile provided by nf-core/configs.'
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config_profile_contact = 'Nathan Spix (@njspix)'
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config_profile_url = 'https://vanandelinstitute.sharepoint.com/sites/SC/SitePages/HPC3-High-Performance-Cluster-and-Cloud-Computing.aspx'
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max_memory = 250.GB
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max_cpus = 40
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max_time = 640.h
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}
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process {
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2022-03-07 20:13:26 +00:00
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beforeScript = 'alias singularity=/varidata/research/software/singularity/singularity-ce-3.8.2/bin/singularity'
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2022-03-07 20:01:46 +00:00
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executor = 'pbs'
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queue = { task.time <= 48.h ? 'shortq' : 'longq' }
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maxRetries = 2
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}
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singularity {
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enabled = true
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autoMounts = true
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}
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