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19 lines
1 KiB
Markdown
19 lines
1 KiB
Markdown
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# nf-core/configs: LUGH configuration
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To use the lugh configuration profile with your pipeline, add `-profile lugh` to your `nextflow run` command. Please take care to use the `-bg` flag or run the job on a compute node. DO NOT RUN ANALYSES ON THE HEAD NODE.
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The configuration file will load prerequisite modules for users, however it is entirely up to the user to have a functional version of nextflow installed in their path.
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Lugh has 3 queues:
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* `MSC`: compute0{1..3}, 16 cpus, 32GB memory (Please reserve for MSc students only)
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* `normal`: compute{10..29}, 16 cpus, 64GB memory.
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& `highmem`: compute0{4..9}, 32 cpus, 128GB memory.
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The configuration profile design is very simple. If your process exceeds 64GB memory or 16 cpus, it is sent to the `highmem` queue. Else, `normal`.
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Whilst I (@BarryDigby) am happy to help people set up their nextflow pipelines, please note that I am not the system administrator.
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### Container Cache
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Your workflow containers will be downloaded and stored at `/data/containers` which is accessible to all users.
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