mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-25 17:29:55 +00:00
28 lines
864 B
Text
28 lines
864 B
Text
|
profiles {
|
||
|
|
crg {
|
||
|
|
params {
|
||
|
|
config_profile_contact = 'Athanasios Baltzis (@athbaltzis)'
|
||
|
|
config_profile_description = 'nf-core/proteinfold CRG profile provided by nf-core/configs'
|
||
|
|
}
|
||
|
|
executor.name = 'crg'
|
||
|
|
process {
|
||
|
|
queue = 'short-sl7,long-sl7'
|
||
|
|
withName: 'RUN_AF2|RUN_AF2_PRED|COLABFOLD_BATCH' {
|
||
|
|
cpus = 1
|
||
|
|
memory = "30 GB"
|
||
|
|
queue = params.use_gpu ? 'gpu' : 'long-sl7'
|
||
|
|
clusterOptions = { ( task.queue == 'gpu' ? '-l gpu=1' : '' ) }
|
||
|
|
}
|
||
|
|
withName: 'ARIA2' {
|
||
|
|
time = '12h'
|
||
|
|
}
|
||
|
|
withName: 'MMSEQS_COLABFOLDSEARCH' {
|
||
|
|
queue = 'mem_512'
|
||
|
|
memory = "100 GB"
|
||
|
|
cpus = 8
|
||
|
|
time = '12h'
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|
||
|
|
}
|