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nf-configs/conf/pipeline/eager/crick.config

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params {
config_profile_contact = "Alexandre Gilardet (@alexandregilardet )" '
config_profile_description = "nf-core/eager Crick profile provided by nf-core/configs"
}
profiles {
screening {
process {
withName:bwa {
cpus = 12
memory = '15 GB'
time = '6h'
}
}
}
production {
process {
withName:adapter_removal {
time = '3d'
}
withName:fastp {
time = '8h'
}
withName:bwa {
cpus = 8
memory = '56 GB'
time = '3d'
}
withName:samtools_filter {
time = '3d'
}
withName:dedup {
cpus = 6
memory = '20 GB'
time = '3d'
}
withName:damageprofiler {
memory = '64 GB'
time = '3d'
errorStrategy = { task.exitStatus in [1,143,137,104,134,139] ? 'retry' : 'finish' }
}
}
}
external {
process {
withName:samtools_filter {
cpus = 12
memory = '72 GB'
}
}
}
}