mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-12-23 18:58:16 +00:00
18 lines
631 B
Markdown
18 lines
631 B
Markdown
|
# nf-core/configs: uppmax ampliseq specific configuration
|
||
|
|
|
||
|
|
Extra specific configuration for the ampliseq pipeline.
|
||
|
|
|
||
|
|
## Usage
|
||
|
|
|
||
|
|
To use, run the pipeline with `-profile uppmax`.
|
||
|
|
|
||
|
|
This will download and launch the ampliseq specific [`uppmax.config`](../../../conf/pipeline/ampliseq/uppmax.config) which has been pre-configured with a setup suitable for the UPPMAX cluster.
|
||
|
|
|
||
|
|
Example: `nextflow run nf-core/ampliseq -profile uppmax`
|
||
|
|
|
||
|
|
## ampliseq specific configurations for uppmax
|
||
|
|
|
||
|
|
Specific configurations for UPPMAX has been made for ampliseq.
|
||
|
|
|
||
|
|
* Makes sure that a fat node is allocated for training and applying a Bayesian classifier.
|