mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-12-23 18:58:16 +00:00
17 lines
937 B
Markdown
17 lines
937 B
Markdown
|
# nf-core/configs: CCGA Med Cluster Configuration
|
||
|
|
|
||
|
|
Deployment and testing of nf-core pipelines at the CCGA Med cluster is on-going.
|
||
|
|
|
||
|
|
To use, run the pipeline with `-profile ccga_med`. This will download and launch the [`ccga_med.config`](../conf/ccga_med.config) which has been pre-configured with a setup suitable for the CCGA cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a Singularity image before execution of the pipeline.
|
||
|
|
|
||
|
|
Before running the pipeline you will need to load Nextflow and Singularity using the environment module system on the cluster. You can do this by issuing the commands below:
|
||
|
|
|
||
|
|
```bash
|
||
|
|
## Load Nextflow and Singularity environment modules
|
||
|
|
module purge
|
||
|
|
module load nextflow
|
||
|
|
module load singularity
|
||
|
|
```
|
||
|
|
|
||
|
|
>NB: Access to the CCGA Med cluster is restricted to IKMB/CCGA employees. Please talk to Marc Hoeppner to get access (@marchoeppner).
|