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nf-configs/docs/pipeline/sarek/munin.md

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Add specific sarek config base, munin specific sarek config and docs rename file improve configs remove unnecessary params
2019-11-20 09:10:05 +00:00
# nf-core/configs: MUNIN sarek specific configuration
Extra specific configuration for sarek pipeline
## Usage
To use, run the pipeline with `-profile munin`.
This will download and launch the [`munin.config`](../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the MUNIN cluster.
Example: `nextflow run nf-core/sarek -profile munin`
update docs
2019-11-20 14:32:35 +00:00
## Sarek specific configurations for MUNIN
Add specific sarek config base, munin specific sarek config and docs rename file improve configs remove unnecessary params
2019-11-20 09:10:05 +00:00
update docs
2019-11-20 14:32:35 +00:00
Specific configurations for MUNIN has been made for sarek.
Add specific sarek config base, munin specific sarek config and docs rename file improve configs remove unnecessary params
2019-11-20 09:10:05 +00:00
update docs
2019-11-20 14:32:35 +00:00
* Params `annotation_cache` set to `true`
Add specific sarek config base, munin specific sarek config and docs rename file improve configs remove unnecessary params
2019-11-20 09:10:05 +00:00
* Path to `snpEff_cache`: `/data1/cache/snpEff/`
* Path to `vep_cache`: `/data1/cache/VEP/`
* Path to `pon`: `/data1/PON/vcfs/BTB.PON.vcf.gz`
* Path to `pon_index`: `/data1/PON/vcfs/BTB.PON.vcf.gz.tbi`
update docs
2019-11-20 14:32:35 +00:00
* Load module `Sentieon` for Processes with `sentieon` labels
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