2019-09-22 14:45:09 +00:00
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'CLIP BATCH ENVIRONMENT (CBE) cluster profile provided by nf-core/configs'
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config_profile_contact = 'Patrick Hüther (@phue)'
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config_profile_url = 'http://www.gmi.oeaw.ac.at/'
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}
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process {
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executor = 'slurm'
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2019-10-10 19:22:19 +00:00
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module = 'singularity/3.2.1'
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2019-09-22 14:45:09 +00:00
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queue = 'c'
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}
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singularity.enabled = true
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params {
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target_qos = 'medium'
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params.max_cpus = 36
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params.max_memory = 170.GB
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igenomesIgnore = true
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}
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if (params.target_qos == 'short') {
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params.max_time = 8.h
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process.clusterOptions = '--qos short'
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} else if (params.target_qos == 'medium') {
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params.max_time = 2.d
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process.clusterOptions = '--qos medium'
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} else {
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params.max_time = 14.d
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process.clusterOptions = '--qos long'
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}
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