mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-23 00:39:56 +00:00
12 lines
684 B
Markdown
12 lines
684 B
Markdown
|
# nf-core/configs: Sarek Specific Configuration - Sheffield Bioinformatics Core Facility ShARC
|
||
|
|
|
||
|
|
Specific configuration for [nf-co.re/sarek](https://nf-co.re/sarek) pipeline
|
||
|
|
|
||
|
|
## Usage
|
||
|
|
|
||
|
|
To use, run nextflow with the pipeline using `-profile sbc_sharc` (note the single hyphen).
|
||
|
|
|
||
|
|
This will download and launch the sarek specific [`sbc_sharc.config`](../../../conf/pipeline/sarek/sbc_sharc.config) which has been pre-configured with a setup suitable for the [University of Sheffield ShARC cluster](https://docs.hpc.shef.ac.uk/en/latest/index.html) and will automatically load the appropriate pipeline-specific configuration file.
|
||
|
|
|
||
|
|
Example: `nextflow run nf-core/sarek -profile sbc_sharc`
|