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31 lines
969 B
Text
31 lines
969 B
Text
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'University of Edinburgh (eddie) cluster profile provided by nf-core/configs.'
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config_profile_contact = 'Alison Meynert (@ameynert)'
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config_profile_url = 'https://www.ed.ac.uk/information-services/research-support/research-computing/ecdf/high-performance-computing'
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}
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conda.createTimeout = '2h'
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process {
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executor = 'sge'
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# memory environment & options
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clusterOptions = {"-l h_vmem=${task.memory.bytes/task.cpus}"}
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penv = 'sharedmem'
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# common SGE error statuses
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errorStrategy = {task.exitStatus in [143,137,104,134,139] ? 'retry' : 'finish'}
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maxErrors = '-1'
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maxRetries = 3
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# load module script for Anaconda
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beforeScript = { '. /etc/profile.d/modules.sh; sleep 2; ' }
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module = 'anaconda/5.3.1'
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}
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params {
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saveReference = true
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// illumina iGenomes reference file paths on GIS Aquila
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igenomes_base = '/exports/igmm/eddie/NextGenResources/igenomes/'
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}
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