mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-12-23 18:58:16 +00:00
20 lines
765 B
Markdown
20 lines
765 B
Markdown
|
# nf-core/configs: eva taxprofiler specific configuration
|
||
|
|
|
||
|
|
Extra specific configuration for taxprofiler pipeline
|
||
|
|
|
||
|
|
## Usage
|
||
|
|
|
||
|
|
To use, run the pipeline with `-profile eva`.
|
||
|
|
|
||
|
|
This will download and launch the taxprofiler specific [`eva.config`](../../../conf/pipeline/taxprofiler/eva.config) which has been pre-configured with a setup suitable for the MPI-EVA cluster.
|
||
|
|
|
||
|
|
Example: `nextflow run nf-core/taxprofiler -profile eva`
|
||
|
|
|
||
|
|
## taxprofiler specific configurations for eva
|
||
|
|
|
||
|
|
Specific configurations for eva has been made for taxprofiler.
|
||
|
|
|
||
|
|
### General profiles
|
||
|
|
|
||
|
|
- The general MPI-EVA profile runs with default nf-core/taxprofiler parameters, but with modifications to account for issues SGE have with Java and python tools, nameling: BBDUK, MALT, MetaPhlAn3, and MEGAN
|