2020-03-05 10:39:19 +00:00
|
|
|
|
2020-03-05 09:24:10 +00:00
|
|
|
params {
|
|
|
|
|
config_profile_description = "Nextflow nf-core profile for ICR davros HPC"
|
|
|
|
|
config_profile_contact = "Adrian Larkeryd"
|
|
|
|
|
}
|
2020-03-04 15:00:33 +00:00
|
|
|
|
|
|
|
|
singularity {
|
|
|
|
|
enabled = true
|
|
|
|
|
runOptions = "--bind /mnt:/mnt --bind /data:/data"
|
|
|
|
|
}
|
2020-03-05 09:24:10 +00:00
|
|
|
|
2020-03-04 15:00:33 +00:00
|
|
|
executor {
|
2020-03-05 10:39:19 +00:00
|
|
|
|
2020-03-04 15:00:33 +00:00
|
|
|
submitRateLimit = "2 sec"
|
|
|
|
|
}
|
2020-03-05 09:24:10 +00:00
|
|
|
|
2020-03-04 15:00:33 +00:00
|
|
|
process {
|
|
|
|
|
executor = "LSF"
|
|
|
|
|
}
|
2020-03-05 09:24:10 +00:00
|
|
|
|
2020-03-04 15:00:33 +00:00
|
|
|
params {
|
2020-03-05 10:39:19 +00:00
|
|
|
|
2020-03-04 15:00:33 +00:00
|
|
|
cpus = 10
|
|
|
|
|
max_cpus = 20
|
|
|
|
|
max_memory = 12.GB
|
|
|
|
|
max_time = 168.h
|
|
|
|
|
igenomes_base = "/mnt/scratch/DDS/SDDS/BIOINFCO/SHARED/genomes/igenomes"
|
|
|
|
|
}
|
