2018-11-23 15:56:34 +00:00
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/*
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* -------------------------------------------------
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2018-11-26 16:32:06 +00:00
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* Nextflow config file for UPPMAX (rackham / irma)
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2018-11-23 15:56:34 +00:00
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* -------------------------------------------------
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* Defines reference genomes, using iGenome paths
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* Imported under the default 'standard' Nextflow
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* profile in nextflow.config
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*/
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singularity {
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enabled = true
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}
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process {
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executor = 'slurm'
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clusterOptions = { "-A $params.project ${params.clusterOptions ?: ''}" }
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}
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params {
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saveReference = true
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// Max resources requested by a normal node on milou. If you need more memory, run on a fat node using:
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// --clusterOptions "-C mem512GB" --max_memory "512GB"
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max_memory = 128.GB
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max_cpus = 16
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max_time = 240.h
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// illumina iGenomes reference file paths on UPPMAX
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igenomes_base = '/sw/data/uppnex/igenomes/'
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}
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