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nf-configs/.travis.yml

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2019-03-06 16:42:14 +00:00
sudo: required
language: python
jdk: openjdk8
services:
- docker
python:
- '3.6'
cache: pip
matrix:
fast_finish: true
before_install:
# PRs to master are only ok if coming from dev branch
- '[ $TRAVIS_PULL_REQUEST = "false" ] || [ $TRAVIS_BRANCH != "master" ] || ([ $TRAVIS_PULL_REQUEST_SLUG = $TRAVIS_REPO_SLUG ] && [ $TRAVIS_PULL_REQUEST_BRANCH = "dev" ])'
install:
# Install Nextflow
- mkdir /tmp/nextflow && cd /tmp/nextflow
- wget -qO- get.nextflow.io | bash
- sudo ln -s /tmp/nextflow/nextflow /usr/local/bin/nextflow
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- mkdir -p ${TRAVIS_BUILD_DIR}/tests && cd ${TRAVIS_BUILD_DIR}/tests
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env:
- NXF_VER='18.10.1' # Specify a minimum NF version that should be tested and work
- NXF_VER='' # Plus: get the latest NF version and check, that it works
script:
# Run the pipeline with the test profile and test remote config
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- nextflow run nf-core/hlatyping -r dev --custom_config_base ${TRAVIS_BUILD_DIR} -profile test_configs,test,docker