mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-25 17:29:55 +00:00
28 lines
727 B
Text
28 lines
727 B
Text
|
process {
|
||
|
|
|
||
|
|
withName:MapReads {
|
||
|
|
cpus = 16
|
||
|
|
}
|
||
|
|
withName:BuildDict {
|
||
|
|
cpus = 1
|
||
|
|
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
|
||
|
|
}
|
||
|
|
withName:BamQC {
|
||
|
|
cpus = 8
|
||
|
|
memory = 128.GB
|
||
|
|
clusterOptions = {"-l h_vmem=${(task.memory + 8.GB).bytes/task.cpus}"}
|
||
|
|
}
|
||
|
|
withName:MarkDuplicates {
|
||
|
|
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
|
||
|
|
}
|
||
|
|
withName:BaseRecalibrator {
|
||
|
|
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
|
||
|
|
}
|
||
|
|
withName:ApplyBQSR {
|
||
|
|
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
|
||
|
|
}
|
||
|
|
withName:GatherBQSRReports {
|
||
|
|
clusterOptions = {"-l h_vmem=${(task.memory + 4.GB).bytes/task.cpus}"}
|
||
|
|
}
|
||
|
|
}
|