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nf-configs/docs/pipeline/hasta.md

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2022-05-12 08:47:03 +00:00
# nf-core/configs: eva taxprofiler specific configuration
Extra specific configuration for taxprofiler pipeline
## Usage
To use, run the pipeline with `-profile hasta`.
This will download and launch the taxprofiler specific [`hasta.config`](../../../conf/pipeline/taxprofiler/hasta.config) which has been pre-configured with a setup suitable for the hasta cluster.
Example: `nextflow run nf-core/taxprofiler -profile hasta`
## taxprofiler specific configurations for hasta
Specific configurations for hasta has been made for taxprofiler.
### General profiles
- The general hasta profile runs with default nf-core/taxprofiler parameters, but with modifications to account for issues with: BBDUK and MALT.