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36 lines
866 B
Text
36 lines
866 B
Text
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# change ${abc123} to your KU ID before using this config
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params {
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config_profile_contact = ‘Adrija Kalvisa <adrija.kalvisa@sund.ku.dk>’
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config_profile_description = ‘dangpufl01 configuration’
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config_profile_url = ‘’
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// General cpus/memory/time requirements
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max_cpus = 30
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max_memory = 200.GB
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max_time = 72.h
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}
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process {
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# should we change to a newer java env?
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beforeScript = ‘module load jdk/1.8.0_291 singularity/3.8.0’
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executor = ‘slurm’
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# uncomment specifically for running mnaseseq pipeline:
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# withName: TrimGalore {
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# cpus = 1
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# }
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}
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executor {
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queueSize = 10
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}
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singularity {
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enabled = true
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autoMounts = true
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# set up the cache directory outside the $HOME directory
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cacheDir = ‘/projects/dan1/people/${abc123}/cache/singularity-images’
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runOptions = ‘--bind /projects:/projects’
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}
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