mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-24 17:19:54 +00:00
24 lines
613 B
Markdown
24 lines
613 B
Markdown
|
# nf-core/configs: UTD sysbio rnaseq specific configuration
|
||
|
|
|
||
|
|
Extra specific configuration for rnaseq pipeline
|
||
|
|
|
||
|
|
## Usage
|
||
|
|
|
||
|
|
To use, run the pipeline with `-profile sysbio`.
|
||
|
|
|
||
|
|
This will download and launch the eager specific [`utd_sysbio.config`](../../../conf/pipeline/rnaseq/utd_sysbio.config) which has been pre-configured with a setup suitable for the shh cluster.
|
||
|
|
|
||
|
|
Example: `nextflow run nf-core/rnaseq -profile sysbio`
|
||
|
|
|
||
|
|
## rnaseq specific configurations for UTD sysbio
|
||
|
|
|
||
|
|
Specific configurations for UTD Sysbio has been made for rnaseq.
|
||
|
|
|
||
|
|
### General profiles
|
||
|
|
|
||
|
|
<!-- TODO -->
|
||
|
|
|
||
|
|
### Contextual profiles
|
||
|
|
|
||
|
|
<!-- TODO -->
|