1
0
Fork 0
mirror of https://github.com/MillironX/nf-configs.git synced 2024-11-24 00:59:55 +00:00
nf-configs/docs/pipeline/demultiplex/aws_tower.md

20 lines
759 B
Markdown
Raw Normal View History

2022-10-04 20:22:26 +00:00
# nf-core/configs: AWS Tower Demultiplex specific configuration
Extra specific configuration for demultiplex pipeline
## Usage
To use, run the pipeline with `-profile aws_tower`.
This will download and launch the demultiplex specific [`aws_tower.config`](../../../conf/pipeline/demultiplex/aws_tower.config) which has been pre-configured with a setup suitable for AWS batch through tower.
Example: `nextflow run nf-core/demultiplex -profile aws_tower`
## eager specific configurations for eva
Specific configurations for AWS has been made for demultiplex.
### General profiles
- The general AWS Tower profile runs with default nf-core/demultiplex parameters, but with modifications to account file transfer speed and optimized bases2fastq resources.