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22 lines
860 B
Markdown
22 lines
860 B
Markdown
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# nf-core/configs: Imperial scflow Specific Configuration
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Extra specific configuration for the scflow pipeline
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## Usage
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To use, run the pipeline with `-profile imperial` or `-profile imperial_mb`.
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This will download and launch the scflow specific [`imperial.config`](../../../conf/pipeline/scflow/imperial.config) which has been pre-configured with a setup suitable for the Imperial HPC cluster.
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Example: `nextflow run nf-core/scflow -profile imperial`
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## scflow specific configurations for Imperial
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Specific configurations for Imperial have been made for scflow.
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* Singularity `enabled` and `autoMounts` set to `true`
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* Singularity `cacheDir` path set to an RDS location
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* Singularity `runOptions` path set to bind (`-B`) RDS paths with container paths.
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* Params `ctd_folder` set to an RDS location.
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* Parms `ensembl_mappings` set to an RDS location.
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