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nf-configs/conf/ccga.config

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//Profile config names for nf-core/configs
params {
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config_profile_description = 'CCGA cluster profile provided by nf-core/configs.'
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config_profile_contact = 'Marc Hoeppner (@marchoeppner)'
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config_profile_url = 'https://www.ccga.uni-kiel.de/'
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}
/*
* -------------------------------------------------
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* Nextflow config file for CCGA cluster in Kiel
* -------------------------------------------------
*/
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singularity {
enabled = true
runOptions = "-B /ifs -B /scratch -B /work_beegfs"
cacheDir = "/ifs/data/nfs_share/ikmb_repository/singularity_cache/"
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}
executor {
queueSize=100
}
process {
// Global process config
executor = 'slurm'
queue = 'ikmb_a'
clusterOptions = { "--qos=ikmb_a" }
}
params {
// illumina iGenomes reference file paths on RZCluster
igenomes_base = '/ifs/data/nfs_share/ikmb_repository/references/iGenomes/references/'
saveReference = true
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max_memory = 128.GB
max_cpus = 16
max_time = 120.h
}