2022-03-16 15:44:13 +00:00
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params {
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2022-03-18 11:01:46 +00:00
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config_profile_contact = "Alexandre Gilardet (@alexandregilardet )" '
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2022-03-18 11:02:02 +00:00
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config_profile_description = "nf-core/eager Crick profile provided by nf-core/configs"
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2022-03-16 15:44:13 +00:00
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}
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2022-03-15 14:13:58 +00:00
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profiles {
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screening {
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process {
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withName:bwa {
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cpus = 12
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memory = '15 GB'
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time = '6h'
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}
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}
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}
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production {
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process {
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withName:adapter_removal {
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time = '3d'
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}
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withName:fastp {
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time = '8h'
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}
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withName:bwa {
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cpus = 8
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memory = '56 GB'
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time = '3d'
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}
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withName:samtools_filter {
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time = '3d'
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}
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withName:dedup {
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cpus = 6
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memory = '20 GB'
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time = '3d'
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}
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withName:damageprofiler {
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memory = '64 GB'
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time = '3d'
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errorStrategy = { task.exitStatus in [1,143,137,104,134,139] ? 'retry' : 'finish' }
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}
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}
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}
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external {
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process {
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withName:samtools_filter {
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cpus = 12
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memory = '72 GB'
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}
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}
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}
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}
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