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18 lines
637 B
Markdown
18 lines
637 B
Markdown
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# nf-core/configs: CRUK-MI sarek specific configuration
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Extra specific configuration for sarek pipeline
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## Usage
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To use, run the pipeline with `-profile crukmi`.
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This will download and launch the sarek specific [`crukmi.config`](../../../conf/pipeline/sarek/munin.config) which has been pre-configured with a setup suitable for the Cancer Research UK Manchester Institute cluster (phoenix).
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Example: `nextflow run nf-core/sarek -profile crukmi`
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## Sarek specific configurations for CRUK-MI
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Specific configurations for `CRUK-MI` has been made for sarek.
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- Initial requested resources for SAMTOOLS_MPILEUP are only 5GB and 1 core.
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