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nf-configs/conf/vai.config

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params {
config_profile_description = 'Van Andel Institute HPC profile provided by nf-core/configs.'
config_profile_contact = 'Nathan Spix (@njspix)'
config_profile_url = 'https://vanandelinstitute.sharepoint.com/sites/SC/SitePages/HPC3-High-Performance-Cluster-and-Cloud-Computing.aspx'
max_memory = 250.GB
max_cpus = 40
max_time = 640.h
}
process {
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beforeScript = 'alias singularity=/varidata/research/software/singularity/singularity-ce-3.8.2/bin/singularity'
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executor = 'pbs'
queue = { task.time <= 48.h ? 'shortq' : 'longq' }
maxRetries = 2
}
singularity {
enabled = true
autoMounts = true
}