2020-10-22 14:57:41 +00:00
|
|
|
//Profile config names for nf-core/configs
|
|
|
|
|
params {
|
|
|
|
|
config_profile_description = 'The ABiMS cluster profile'
|
|
|
|
|
config_profile_contact = 'Gildas Le Corguillé (@lecorguille)'
|
|
|
|
|
config_profile_url = 'https://abims.sb-roscoff.fr'
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
singularity {
|
|
|
|
|
enabled = true
|
2020-10-22 16:18:55 +00:00
|
|
|
autoMounts = false
|
2020-10-22 14:57:41 +00:00
|
|
|
runOptions = '-B /scratch:/scratch -B /scratch2:/scratch2 -B /shared:/shared'
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
process {
|
|
|
|
|
executor = 'slurm'
|
|
|
|
|
}
|
|
|
|
|
|
|
|
|
|
params {
|
|
|
|
|
igenomes_ignore = true
|
|
|
|
|
igenomesIgnore = true //deprecated
|
|
|
|
|
max_memory = 750.GB
|
|
|
|
|
max_cpus = 200
|
|
|
|
|
max_time = 24.h
|
|
|
|
|
}
|
