2020-02-20 16:14:18 +00:00
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// sarek/uppmax specific profile config
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params {
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config_profile_contact = 'Maxime Garcia (@MaxUlysse)'
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config_profile_description = 'nf-core/sarek uppmax profile provided by nf-core/configs'
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2020-02-27 16:21:03 +00:00
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singleCPUmem = 7000.MB
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2020-02-27 15:52:51 +00:00
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// Just useful until iGenomes is updated on UPPMAX
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2020-02-20 16:14:18 +00:00
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igenomeIgnore = true
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genomes_base = params.genome == 'GRCh37' ? '/sw/data/uppnex/ToolBox/ReferenceAssemblies/hg38make/bundle/2.8/b37' : '/sw/data/uppnex/ToolBox/hg38bundle'
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}
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2020-04-09 09:35:37 +00:00
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def hostname = "hostname".execute().text.trim()
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2020-03-30 14:40:11 +00:00
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if (hostname ==~ "r.*") {
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2020-02-27 16:22:03 +00:00
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params.singleCPUmem = 6400.MB
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}
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2020-04-09 09:35:37 +00:00
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2020-02-27 15:52:51 +00:00
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if (hostname ==~ "i.*") {
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params.singleCPUmem = 15.GB
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}
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