# nf-core/configs: uppmax sarek specific configuration
Extra specific configuration for sarek pipeline
## Usage
To use, run the pipeline with `-profile uppmax`.
This will download and launch the sarek specific [`uppmax.config`](../../../conf/pipeline/sarek/uppmax.config) which has been pre-configured with a setup suitable for uppmax clusters.
Example: `nextflow run nf-core/sarek -profile uppmax`
## Sarek specific configurations for uppmax clusters
Specific configurations for uppmax clusters has been made for sarek.
* Set paths to reference genomes
* Set path to singularity containers for `irma`
