mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-25 09:19:56 +00:00
19 lines
604 B
Markdown
19 lines
604 B
Markdown
|
# nf-core/configs: uppmax sarek specific configuration
|
||
|
|
|
||
|
|
Extra specific configuration for sarek pipeline
|
||
|
|
|
||
|
|
## Usage
|
||
|
|
|
||
|
|
To use, run the pipeline with `-profile uppmax`.
|
||
|
|
|
||
|
|
This will download and launch the sarek specific [`uppmax.config`](../conf/pipeline/sarek/uppmax.config) which has been pre-configured with a setup suitable for uppmax clusters.
|
||
|
|
|
||
|
|
Example: `nextflow run nf-core/sarek -profile uppmax`
|
||
|
|
|
||
|
|
## Sarek specific configurations for uppmax clusters
|
||
|
|
|
||
|
|
Specific configurations for uppmax clusters has been made for sarek.
|
||
|
|
|
||
|
|
* Set paths to reference genomes
|
||
|
|
* Set path to singularity containers for `irma`
|