nf-configs/.github/workflows/main.yml

name: nfcore configs tests

## Check whether users added their config to the matrix
on: 
  push: 
   paths:
    - '.github/main.yml'

jobs:
  profile_test:
    runs-on: ubuntu-latest
    name: Run individual profiles
    strategy:
        matrix:
            profile: ['awsbatch, bigpurple, binac, cbe, ccga_dx, ccga, cfc, crick, czbiohub_aws_highpriority, czbiohub_aws, denbi_qbic, genouest, gis, hebbe, kraken, munin, pasteur, phoenix, prince, shh, uct_hex, uppmax_devel, uppmax, uzh']
    steps:
        - uses: actions/checkout@v1
        - name: Install Nextflow
          run: |
          wget -qO- get.nextflow.io | bash
          sudo mv nextflow /usr/local/bin/
        - name: "Check profile"
          run: nextflow run ${GITHUB_WORKSPACE}/configtest.nf --custom_config_base=${GITHUB_WORKSPACE} -profile ${{ matrix.profile }}