nf-configs/conf/medair.config

//Profile config names for nf-core/configs
params {
  config_profile_description = 'Cluster profile for medair (local cluster of Clinical Genomics Gothenburg)'
  config_profile_contact = 'Clinical Genomics, Gothenburg'
  config_profile_url = 'https://www.scilifelab.se/units/clinical-genomics-goteborg/'
}

//Nextflow parameters
singularity {
    enabled = true
    cacheDir = "/apps/bio/dependencies/nf-core/singularities"
}

profiles {
  
  wgs {
    process {
      queue = 'wgs.q'
      executor = 'sge'
      penv = 'mpi'
      process.clusterOptions = '-l excl=1'
      params.max_cpus = 40
      params.max_time = 48.h
      params.max_memory = 128.GB
    }
  }

  production {
    process {
      queue = 'production.q'
      executor = 'sge'
      penv = 'mpi'
      process.clusterOptions = '-l excl=1'
      params.max_cpus = 40
      params.max_time = 480.h
      params.max_memory = 128.GB
    }
  }
}