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nf-configs/conf/ccga_med.config

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//Profile config names for nf-core/configs
params {
config_profile_description = 'CCGA Med cluster profile provided by nf-core/configs.'
config_profile_contact = 'Marc Hoeppner (@marchoeppner)'
config_profile_url = 'https://www.ccga.uni-kiel.de/'
}
/*
* -------------------------------------------------
* Nextflow config file for CCGA cluster in Kiel
* -------------------------------------------------
*/
singularity {
enabled = true
runOptions = "-B /work_ifs -B /scratch"
cacheDir = "/work_ifs/ikmb_repository/singularity_cache/"
}
executor {
queueSize=100
}
process {
// Global process config
executor = 'slurm'
queue = 'all'
}
params {
// illumina iGenomes reference file paths on RZCluster
igenomes_base = '/work_ifs/ikmb_repository/references/iGenomes/references/'
saveReference = true
max_memory = 250.GB
max_cpus = 24
max_time = 120.h
}