mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-12-23 18:58:16 +00:00
21 lines
759 B
Text
21 lines
759 B
Text
|
// Nextflow config file for running on Google Cloud Life Sciences
|
||
|
|
params {
|
||
|
|
config_profile_description = 'Google Cloud Life Sciences Profile'
|
||
|
|
config_profile_contact = 'Evan Floden, Seqera Labs (@evanfloden)'
|
||
|
|
config_profile_url = 'https://cloud.google.com/life-sciences'
|
||
|
|
|
||
|
|
google_zone = 'europe-west2-c'
|
||
|
|
google_bucket = false
|
||
|
|
google_debug = false
|
||
|
|
google_preemptible = true
|
||
|
|
}
|
||
|
|
|
||
|
|
process.executor = 'google-lifesciences'
|
||
|
|
google.zone = params.google_zone
|
||
|
|
google.lifeSciences.debug = params.google_debug
|
||
|
|
workDir = params.google_bucket
|
||
|
|
google.lifeSciences.preemptible = params.google_preemptible
|
||
|
|
if (google.lifeSciences.preemptible) {
|
||
|
|
process.errorStrategy = { task.exitStatus==14 ? 'retry' : 'terminate' }
|
||
|
|
process.maxRetries = 5
|
||
|
|
}
|