2021-05-19 03:46:07 -04:00
|
|
|
params {
|
2021-05-20 04:53:35 -04:00
|
|
|
config_profile_description = "University of Bern, Interfaculty Bioinformatics Unit cluster profile"
|
2021-05-19 03:46:07 -04:00
|
|
|
config_profile_contact = "irene.keller@dbmr.unibe.ch; info@bioinformatics.unibe.ch"
|
|
|
|
config_profile_url = "https://www.bioinformatics.unibe.ch/"
|
|
|
|
max_memory = 500.GB
|
|
|
|
max_cpus = 128
|
2021-05-20 07:52:13 -04:00
|
|
|
max_time = 240.h
|
2021-05-19 03:46:07 -04:00
|
|
|
}
|
|
|
|
|
|
|
|
process {
|
2021-05-20 04:53:35 -04:00
|
|
|
executor = "slurm"
|
2021-05-19 03:46:07 -04:00
|
|
|
maxRetries = 2
|
|
|
|
beforeScript = 'mkdir -p ./tmp/ && export TMPDIR=./tmp/'
|
|
|
|
}
|
|
|
|
|
|
|
|
executor {
|
2021-05-20 04:53:35 -04:00
|
|
|
queueSize = 30
|
2021-05-19 03:46:07 -04:00
|
|
|
}
|
|
|
|
|
|
|
|
singularity {
|
2021-05-20 07:44:59 -04:00
|
|
|
enabled = true
|
|
|
|
autoMounts = true
|
2021-05-19 03:46:07 -04:00
|
|
|
}
|