nf-configs/conf/awsbatch.config

//Nextflow config file for running on AWS batch

params {
  config_profile_name = 'AWSBATCH'
  config_profile_description = 'AWSBATCH Cloud Profile'
  config_profile_contact = 'Alexander Peltzer (@apeltzer)'
  config_profile_url = 'https://aws.amazon.com/batch/'
  awsregion = 'eu-west-1'
  awsqueue = 'test'
  tracedir = './'
}

process.executor = 'awsbatch'
executor.awscli = '/home/ec2-user/miniconda/bin/aws'
add new profile to be shared: awsbatch 2019-10-10 13:33:06 +00:00			`//Nextflow config file for running on AWS batch`

			`params {`
			`config_profile_name = 'AWSBATCH'`
			`config_profile_description = 'AWSBATCH Cloud Profile'`
			`config_profile_contact = 'Alexander Peltzer (@apeltzer)'`
			`config_profile_url = 'https://aws.amazon.com/batch/'`
Shift some configs to params scope 2019-11-25 23:57:10 +00:00			`awsregion = 'eu-west-1'`
			`awsqueue = 'test'`
			`tracedir = './'`
add new profile to be shared: awsbatch 2019-10-10 13:33:06 +00:00			`}`

			`process.executor = 'awsbatch'`
			`executor.awscli = '/home/ec2-user/miniconda/bin/aws'`