nf-configs/docs/pipeline/rnaseq/sbc_sharc.md

# nf-core/configs: RNA-Seq Specific Configuration - Sheffield Bioinformatics Core Facility ShARC

Specific configuration for [nf-co.re/rnaseq](https://nf-co.re/rnaseq) pipeline

## Usage

To use, run nextflow with the pipeline using `-profile sbc_sharc` (note the single hyphen).

This will download and launch the rnaseq specific [`sbc_sharc.config`](../../../conf/pipeline/rnaseq/sbc_sharc.config) which has been pre-configured with a setup suitable for the [University of Sheffield ShARC cluster](https://docs.hpc.shef.ac.uk/en/latest/index.html) and will automatically load the appropriate pipeline-specific configuration file.

Example: `nextflow run nf-core/rnaseq -profile sbc_sharc`
Made changes requested for PR 2022-09-14 07:42:40 +00:00			`# nf-core/configs: RNA-Seq Specific Configuration - Sheffield Bioinformatics Core Facility ShARC`

			`Specific configuration for [nf-co.re/rnaseq](https://nf-co.re/rnaseq) pipeline`

			`## Usage`

			To use, run nextflow with the pipeline using `-profile sbc_sharc` (note the single hyphen).

Updated pipeline config docs for atacseq, chipseq and rnaseq 2022-09-14 07:46:11 +00:00			This will download and launch the rnaseq specific [`sbc_sharc.config`](../../../conf/pipeline/rnaseq/sbc_sharc.config) which has been pre-configured with a setup suitable for the [University of Sheffield ShARC cluster](https://docs.hpc.shef.ac.uk/en/latest/index.html) and will automatically load the appropriate pipeline-specific configuration file.
Made changes requested for PR 2022-09-14 07:42:40 +00:00
			Example: `nextflow run nf-core/rnaseq -profile sbc_sharc`