2019-03-13 16:15:16 +00:00
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//Profile config names for nf-core/configs
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params {
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config_profile_description = 'Genome Institute of Singapore (Aquila) cluster profile provided by nf-core/configs.'
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config_profile_contact = 'Andreas Wilm (@andreas-wilm)'
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config_profile_url = 'https://www.a-star.edu.sg/gis/'
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}
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2018-11-23 15:56:34 +00:00
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process {
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executor = 'sge'
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clusterOptions = { "-l mem_free=" + task.memory.toString().replaceAll(/[\sB]/,'') }
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penv = 'OpenMP'
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errorStrategy = { task.attempt < 2 ? 'retry' : 'finish' }
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// auto translate container name into conda environment name
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beforeScript = { 'source /mnt/projects/rpd/rc/init.2017-04; module load miniconda3; set +u; source activate nfcore-rnaseq-1.0dev; set -u;' }
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}
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params {
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saveReference = true
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// illumina iGenomes reference file paths on GIS Aquila
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igenomes_base = '/mnt/projects/rpd/genomes.testing/S3_igenomes/'
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}
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