mirror of
https://github.com/MillironX/nf-configs.git
synced 2024-11-24 17:19:54 +00:00
28 lines
590 B
Text
28 lines
590 B
Text
|
/*
|
||
|
|
* -------------------------------------------------
|
||
|
|
* University of Cape Town HEX cluster config file
|
||
|
|
* -------------------------------------------------
|
||
|
|
* http://hpc.uct.ac.za/index.php/hex-3/
|
||
|
|
*/
|
||
|
|
|
||
|
|
singularity {
|
||
|
|
enabled = true
|
||
|
|
cacheDir = "/scratch/DB/bio/singularity-containers"
|
||
|
|
}
|
||
|
|
|
||
|
|
process {
|
||
|
|
stageInMode = 'symlink'
|
||
|
|
stageOutMode = 'rsync'
|
||
|
|
queue = 'UCTlong'
|
||
|
|
clusterOptions = { "-M $params.email -m abe -l nodes=1:ppn=1:series600" }
|
||
|
|
}
|
||
|
|
|
||
|
|
executor{
|
||
|
|
executor = 'pbs'
|
||
|
|
jobName = { "$task.tag" }
|
||
|
|
}
|
||
|
|
|
||
|
|
params {
|
||
|
|
igenomes_base = '/scratch/DB/bio/rna-seq/references'
|
||
|
|
}
|